| yes, a clown will kill the Goni...
best is to separate them, and get the clown to host in something else.
you can put in a divider until you get it hosting in something new, like another coral, or an anemone
check out the Goniopora podcast show for loads of info on caring for and keeping these corals
i personally wouldn't say they are doomed in captivity, but they are not "easy" corals. i had one that was about a year old and when my clown starting hosting in it, it died in about a month or so
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